Originally Posted by DanishDevil
It probably wouldn't be a motherboard defect, but it could be a bad BIOS flash. You have a soldered on BIOS chip with 8 pins, I believe. You could contact Intel directly and run through their steps, and they may have you RMA the board, or they might be able to send you a new BIOS chip.
So let me make sure I understand what's happening. ITK is giving you an error while trying to re-enable the "red" SATA ports as marked by Law-II, right?
I have to run, but hopefully somebody else here will pick up where I left off and help you out. Best of luck!
I would contact my manufacturer if i see any problem in installing the upcoming bios update from Intel, i hope they release a new update very soon and my problem sorts out.
Resetting the jumper didn't help, i will post on Intel Support Forum.
Thanks to Law-11 for his support as well.