To be honest I'm pretty lost to what is causing the problem I originally thought it was the graphics card/graphics driver but now I'm not so sure, I'm only able to boot into Windows using Safe-Mode. When I try boot normally into Windows I get either stop code 50 or 51 and this is with everything such as USB devices, testing each RAM module on it's own (also tested the RAM with Windows Memeory Test which was fine). I do have a thread about it...
Here I was just going to do what Jr has suggested, not that I want to but nevermind, reinstall Windows it is.