Yeah - the average 12V fan draws very very little current in relative terms.
There should be no problem running 2 or even 3 fans off of one connector - not that I'd recommend it, I'm just saying there is in all reasonable probability , very little actual risk, unless you are using NON spec fans IE : Fans that WHERE NOT intended / or sold / as PC fans.
You can, for example, get 12cm 12v fans in electronic stores with motors over 1.2A - and those should NOT be connected to your motherboard fan headers, however if you are using "PC" fans - then go ahead.
At the same time I would agree with Drippy - if there is ANY OTHER WAY, DO THAT FIRST. Using things OUTSIDE of their intended design parameters is always a bad idea - even if it DOES work.
And remember too - You may share the VOLTAGE of one header with 2 fans - but you cant share the "probe" - that is to say the (Usually Yellow Or White) wire that reports fan SPEED to the board - if you join that as well - you will just get garbage readings - you need to chose ONE fan to use as the probe.
Taking it even further, Sharing is only probably going to work on STANDARD 3 wire fans - normally red, black, and yellow - the 4 wire PWM fans - like Intel's stock coolers should never be shared - as it is highly possible to blow the PWM chip ( Pulse Width Modulator)
EDIT : I have 2 Standard Gigabyte case fan's that come fitted in cases as stock cooling in their budget cases, (8cm) is rated at 0.12A and (12CM) is rated at 0.20A - Adding up to 0.32A which
should be within tolerance, but try and keep it under 0.5A - just for sensibility's sake
